LOC_Os02g03930.1


Description : Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana (sp|q0wpz6|pp158_arath : 720.0)


Gene families : OG_01_0009700 (Archaeplastida) Phylogenetic Tree(s): OG_01_0009700_tree ,
OG_02_0009739 (LandPlants) Phylogenetic Tree(s): OG_02_0009739_tree ,
OG_03_0007391 (SeedPlants) Phylogenetic Tree(s): OG_03_0007391_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g03930.1
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023885001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.03 Archaeplastida
Solyc02g021020.4.1 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.04 Archaeplastida
Zm00001e025316_P001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.05 Archaeplastida
AMTR_s00029p00147240 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g17140... 0.02 LandPlants
AT2G17140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
GSVIVT01023885001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.03 LandPlants
Solyc02g021020.4.1 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.04 LandPlants
Zm00001e025316_P001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.05 LandPlants
AMTR_s00029p00147240 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g17140... 0.02 SeedPlants
AT2G17140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
GSVIVT01023885001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.03 SeedPlants
Solyc02g021020.4.1 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.02 SeedPlants
Zm00001e025316_P001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 313
IPR002885 Pentatricopeptide_repeat 455 487
IPR002885 Pentatricopeptide_repeat 514 545
IPR002885 Pentatricopeptide_repeat 552 599
IPR002885 Pentatricopeptide_repeat 148 193
IPR002885 Pentatricopeptide_repeat 389 436
IPR002885 Pentatricopeptide_repeat 321 368
IPR002885 Pentatricopeptide_repeat 622 671
IPR002885 Pentatricopeptide_repeat 211 259
No external refs found!