Aliases : LOC_Os03g21980
Description : tRNA pseudouridine synthase (TruA)
Gene families : OG0007505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007505_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os03g21980.1 | |
Cluster | HCCA: Cluster_145 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Dcu_g18723 | No alias | EC_5.4 intramolecular transferase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01024604001 | No alias | RNA processing.RNA... | 0.07 | OrthoFinder output from all 47 species | |
Sam_g12628 | No alias | EC_5.4 intramolecular transferase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e001596_P001 | Zm00001e001596 | tRNA pseudouridine synthase (TruA) | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004784 | superoxide dismutase activity | IEP | HCCA |
BP | GO:0006801 | superoxide metabolic process | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | HCCA |
MF | GO:0019842 | vitamin binding | IEP | HCCA |
CC | GO:0019867 | outer membrane | IEP | HCCA |
MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR020097 | PsdUridine_synth_TruA_a/b_dom | 336 | 418 |
No external refs found! |