LOC_Os03g21980.1 (LOC_Os03g21980)


Aliases : LOC_Os03g21980

Description : tRNA pseudouridine synthase (TruA)


Gene families : OG0007505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007505_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g21980.1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Dcu_g18723 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024604001 No alias RNA processing.RNA... 0.07 OrthoFinder output from all 47 species
Sam_g12628 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001596_P001 Zm00001e001596 tRNA pseudouridine synthase (TruA) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR020097 PsdUridine_synth_TruA_a/b_dom 336 418
No external refs found!