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Aliases : LOC_Os03g21370
Description : scaffolding component LCAA of Mg-protoporphyrin IX monomethylester cyclase complex
Gene families : OG0006125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006125_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os03g21370.1 | |
| Cluster | HCCA: Cluster_59 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00077p00179590 | evm_27.TU.AmTr_v1... | Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll... | 0.06 | OrthoFinder output from all 47 species | |
| AT5G58250 | No alias | unknown protein; FUNCTIONS IN: molecular_function... | 0.22 | OrthoFinder output from all 47 species | |
| Adi_g008816 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.1 | OrthoFinder output from all 47 species | |
| Aev_g02557 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.1 | OrthoFinder output from all 47 species | |
| Ala_g03233 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g04177 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g18009 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G052300.1 | Ceric.30G052300 | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.14 | OrthoFinder output from all 47 species | |
| Dac_g16639 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g18827 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.11 | OrthoFinder output from all 47 species | |
| Ehy_g15832 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01024524001 | No alias | Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll... | 0.21 | OrthoFinder output from all 47 species | |
| Gb_09919 | No alias | scaffolding component LCAA of Mg-protoporphyrin IX... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g20674 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.12 | OrthoFinder output from all 47 species | |
| Lfl_g00499 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.03 | OrthoFinder output from all 47 species | |
| MA_46214g0010 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| Mp5g08000.1 | No alias | scaffolding component LCAA of Mg-protoporphyrin IX... | 0.2 | OrthoFinder output from all 47 species | |
| Msp_g10285 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g03333 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g04898 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g07610 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g06125 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g007760.4.1 | Solyc06g007760 | scaffolding component LCAA of Mg-protoporphyrin IX... | 0.13 | OrthoFinder output from all 47 species | |
| Spa_g16999 | No alias | scaffold component *(LCAA) of Mg-protoporphyrin IX... | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e001556_P001 | Zm00001e001556 | scaffolding component LCAA of Mg-protoporphyrin IX... | 0.24 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006450 | regulation of translational fidelity | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008483 | transaminase activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0065008 | regulation of biological quality | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR019616 | Ycf54 | 69 | 159 |
| No external refs found! |