- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LOC_Os03g21140
Description : C3H zinc finger transcription factor
Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G51950 | No alias | Zinc finger (CCCH-type) family protein / RNA recognition... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G63450 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.08 | OrthoFinder output from all 47 species | |
| AT5G12440 | No alias | CCCH-type zinc fingerfamily protein with RNA-binding domain | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g014190 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g057680 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g112963 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g125875 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0004.g008616 | No alias | not classified & original description: CDS=390-1862 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0076.g037780 | No alias | not classified & original description: CDS=1-1272 | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g07818 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01001467001 | No alias | RNA biosynthesis.transcriptional activation.C3H zinc... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os11g03220.1 | LOC_Os11g03220 | C3H zinc finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| MA_479847g0010 | No alias | C3H zinc finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g31565 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0013.g005782 | No alias | not classified & original description: CDS=1-2136 | 0.06 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0019.g007845 | No alias | not classified & original description: CDS=1-2574 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0029.g010074 | No alias | not classified & original description: CDS=287-2170 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g09058 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g50833 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g008600.4.1 | Solyc01g008600 | C3H zinc finger transcription factor | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e001546_P001 | Zm00001e001546 | C3H zinc finger transcription factor | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e020869_P004 | Zm00001e020869 | C3H zinc finger transcription factor | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e024022_P001 | Zm00001e024022 | C3H zinc finger transcription factor | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e038256_P001 | Zm00001e038256 | C3H zinc finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e039250_P004 | Zm00001e039250 | C3H zinc finger transcription factor | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0046872 | metal ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| CC | GO:0018995 | host cellular component | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| CC | GO:0033643 | host cell part | IEP | HCCA |
| CC | GO:0033646 | host intracellular part | IEP | HCCA |
| CC | GO:0033647 | host intracellular organelle | IEP | HCCA |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | HCCA |
| CC | GO:0042025 | host cell nucleus | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| No external refs found! |