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  5. LOC_Os03g19960.1

LOC_Os03g19960.1 (LOC_Os03g19960)


Aliases : LOC_Os03g19960

Description : helicase Prp43 of Intron-Lariat Spliceosome complex


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g19960.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00073830 ESP3, EMB2733,... RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Aev_g27800 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g73283 MEE29 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.25G032700.1 Ceric.25G032700 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021589.29 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Cre06.g266383 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre07.g349100 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Dde_g26432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species
Len_g08915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Nbi_g07572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10443 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g14727 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c24_70V3.1 Pp3c24_70 RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Sam_g02942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g28400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 615 691
IPR001650 Helicase_C 269 402
IPR003593 AAA+_ATPase 81 217
IPR007502 Helicase-assoc_dom 465 553
No external refs found!