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  5. LOC_Os03g19080.3

LOC_Os03g19080.3 (LOC_Os03g19080)


Aliases : LOC_Os03g19080

Description : no hits & (original description: none)


Gene families : OG0001929 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001929_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g19080.3
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00077370 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00079p00166070 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT1G67040 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.06 OrthoFinder output from all 47 species
AT3G58650 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.23 OrthoFinder output from all 47 species
Adi_g057975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57945.t1 Aspi01Gene57945 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010580 No alias not classified & original description: CDS=28-3156 0.04 OrthoFinder output from all 47 species
Ceric.06G066100.1 Ceric.06G066100 not classified & original description: pacid=50619532... 0.15 OrthoFinder output from all 47 species
Ceric.17G018400.1 Ceric.17G018400 not classified & original description: pacid=50618175... 0.05 OrthoFinder output from all 47 species
Ceric.24G058500.1 Ceric.24G058500 not classified & original description: pacid=50628935... 0.09 OrthoFinder output from all 47 species
GSVIVT01035042001 No alias No description available 0.25 OrthoFinder output from all 47 species
Gb_15628 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Len_g40624 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g03463 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g38595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003194 No alias not classified & original description: CDS=1-3084 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g007008 No alias not classified & original description: CDS=144-3170 0.04 OrthoFinder output from all 47 species
Solyc01g060410.4.1 Solyc01g060410 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
Solyc01g100290.4.1 Solyc01g100290 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g41418 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g08470 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g13690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001394_P001 Zm00001e001394 no hits & (original description: none) 0.26 OrthoFinder output from all 47 species
Zm00001e006276_P001 Zm00001e006276 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e038358_P001 Zm00001e038358 no hits & (original description: none) 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032795 DUF3741-assoc 87 117
IPR025486 DUF4378 776 930
No external refs found!