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  5. LOC_Os03g18810.1

LOC_Os03g18810.1 (AGD2, LOC_Os03g18810)


Aliases : AGD2, LOC_Os03g18810

Description : LL-diaminopimelate aminotransferase


Gene families : OG0001991 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001991_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g18810.1

Target Alias Description ECC score Gene Family Method Actions
AT4G33680 AGD2 Pyridoxal phosphate (PLP)-dependent transferases... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020537.26 AGD2 Probable LL-diaminopimelate aminotransferase,... 0.02 OrthoFinder output from all 47 species
Cre17.g734200 AGD2 Amino acid metabolism.biosynthesis.aspartate... 0.05 OrthoFinder output from all 47 species
Ehy_g01345 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036983001 AGD2 Amino acid metabolism.biosynthesis.aspartate... 0.1 OrthoFinder output from all 47 species
Gb_40794 AGD2 LL-diaminopimelate aminotransferase 0.03 OrthoFinder output from all 47 species
Mp8g02400.1 AGD2 LL-diaminopimelate aminotransferase 0.03 OrthoFinder output from all 47 species
Nbi_g06161 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36650 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29299 No alias LL-diaminopimelate aminotransferase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g073280.3.1 AGD2, Solyc06g073280 LL-diaminopimelate aminotransferase 0.04 OrthoFinder output from all 47 species
Zm00001e001365_P001 AGD2, Zm00001e001365 LL-diaminopimelate aminotransferase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004839 Aminotransferase_I/II 95 459
No external refs found!