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  5. LOC_Os03g17600.1

LOC_Os03g17600.1 (LOC_Os03g17600)


Aliases : LOC_Os03g17600

Description : no description available(sp|q9zuu2|pxl2c_arath : 270.0)


Gene families : OG0004942 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004942_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17600.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AT2G37240 No alias Thioredoxin superfamily protein 0.17 OrthoFinder output from all 47 species
Ala_g07578 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g07542 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g14487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013236 No alias not classified & original description: CDS=1-909 0.03 OrthoFinder output from all 47 species
Ceric.12G094200.1 Ceric.12G094200 not classified & original description: pacid=50602377... 0.06 OrthoFinder output from all 47 species
Dac_g07663 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g02479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10313 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_18108 No alias no description available(sp|q9zuu2|pxl2c_arath : 245.0) 0.08 OrthoFinder output from all 47 species
Lfl_g03705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426424g0010 No alias no description available(sp|q9zuu2|pxl2c_arath : 80.5) 0.05 OrthoFinder output from all 47 species
Msp_g20104 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g04076 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g16194 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g10532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00835 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35077 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g007190.3.1 Solyc09g007190 no description available(sp|q9zuu2|pxl2c_arath : 298.0) 0.09 OrthoFinder output from all 47 species
Spa_g24118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001285_P001 Zm00001e001285 no description available(sp|q9zuu2|pxl2c_arath : 270.0) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR032801 PXL2A/B/C 118 234
No external refs found!