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  5. LOC_Os03g17170.1

LOC_Os03g17170.1 (LOC_Os03g17170)


Aliases : LOC_Os03g17170

Description : E3 ubiquitin-protein ligase CSU1 OS=Arabidopsis thaliana (sp|q9sy88|csu1_arath : 411.0)


Gene families : OG0005972 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005972_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17170.1

Target Alias Description ECC score Gene Family Method Actions
Cba_g02427 No alias regulatory E3 ubiquitin ligase *(CSU1) of COP1 activity... 0.02 OrthoFinder output from all 47 species
Dde_g02684 No alias regulatory E3 ubiquitin ligase *(CSU1) of COP1 activity... 0.03 OrthoFinder output from all 47 species
Ehy_g04491 No alias regulatory E3 ubiquitin ligase *(CSU1) of COP1 activity... 0.04 OrthoFinder output from all 47 species
Zm00001e001254_P001 Zm00001e001254 E3 ubiquitin-protein ligase CSU1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e038463_P001 Zm00001e038463 E3 ubiquitin-protein ligase CSU1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR027799 Rtf2_RING-finger 187 285
IPR031790 Znf-NOSIP 5 75
No external refs found!