Aliases : PAB7, LOC_Os03g17030
Description : mRNA poly-A-tail binding factor (PABP)
Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os03g17030.1 | |
Cluster | HCCA: Cluster_13 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G22760 | PAB3 | poly(A) binding protein 3 | 0.03 | OrthoFinder output from all 47 species | |
AT1G34140 | PAB1 | poly(A) binding protein 1 | 0.02 | OrthoFinder output from all 47 species | |
Adi_g003459 | PABP4, PAB4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g13165 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Als_g39199 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0280.g062302 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01016951001 | PAB6 | Protein biosynthesis.translation initiation.mRNA... | 0.04 | OrthoFinder output from all 47 species | |
Len_g03330 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g22593 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g03060 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g08384 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g008620.3.1 | PAB7, Solyc09g008620 | mRNA poly-A-tail binding factor (PABP) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005092 | GDP-dissociation inhibitor activity | IEP | HCCA |
MF | GO:0005094 | Rho GDP-dissociation inhibitor activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
MF | GO:0008289 | lipid binding | IEP | HCCA |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
MF | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides | IEP | HCCA |
MF | GO:0030570 | pectate lyase activity | IEP | HCCA |
MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
MF | GO:0030695 | GTPase regulator activity | IEP | HCCA |
BP | GO:0042545 | cell wall modification | IEP | HCCA |
BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | HCCA |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071555 | cell wall organization | IEP | HCCA |
MF | GO:0140677 | molecular function activator activity | IEP | HCCA |
No external refs found! |