LOC_Os03g14990.1 (EMB1144, LOC_Os03g14990)

Aliases : EMB1144, LOC_Os03g14990

Description : chorismate synthase

Gene families : OG0003723 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003723_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g14990.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00175p00047170	EMB1144,...	Amino acid metabolism.biosynthesis.shikimate...	0.03	OrthoFinder output from all 47 species
AT1G48850	EMB1144	chorismate synthase, putative /...	0.12	OrthoFinder output from all 47 species
Adi_g074541	EMB1144	EC_4.2 carbon-oxygen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g00576	EMB1144	EC_4.2 carbon-oxygen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0036.g025755	EMB1144	EC_4.2 carbon-oxygen lyase & original description: CDS=226-1554	0.02	OrthoFinder output from all 47 species
Ceric.04G005500.1	EMB1144, Ceric.04G005500	EC_4.2 carbon-oxygen lyase & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020610.108	EMB1144	Amino acid metabolism.biosynthesis.shikimate...	0.01	OrthoFinder output from all 47 species
Dde_g21281	EMB1144	EC_4.2 carbon-oxygen lyase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01016288001	EMB1144	Amino acid metabolism.biosynthesis.shikimate...	0.1	OrthoFinder output from all 47 species
Gb_41600	EMB1144	chorismate synthase	0.03	OrthoFinder output from all 47 species
Len_g25204	EMB1144	EC_4.2 carbon-oxygen lyase & original description: none	0.03	OrthoFinder output from all 47 species
MA_257104g0010	EMB1144	Chorismate synthase 1, chloroplastic OS=Solanum...	0.05	OrthoFinder output from all 47 species
Ore_g16506	EMB1144	EC_4.2 carbon-oxygen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g10366	EMB1144	EC_4.2 carbon-oxygen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005841	EMB1144	EC_4.2 carbon-oxygen lyase & original description: CDS=36-1460	0.03	OrthoFinder output from all 47 species
Solyc04g049350.4.1	EMB1144, Solyc04g049350	chorismate synthase	0.09	OrthoFinder output from all 47 species
Spa_g07926	EMB1144	EC_4.2 carbon-oxygen lyase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004107	chorismate synthase activity	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009072	aromatic amino acid metabolic process	None	Extended
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	HCCA
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	HCCA
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	HCCA
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0016289	CoA hydrolase activity	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000453	Chorismate_synth	58	405

External Links

No external refs found!

LOC_Os03g14990.1 (EMB1144, LOC_Os03g14990)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation