1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g13760.1

LOC_Os03g13760.1 (LOC_Os03g13760)


Aliases : LOC_Os03g13760

Description : component Sm-D3 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g13760.1

Target Alias Description ECC score Gene Family Method Actions
AT1G20580 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
Adi_g022524 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Aop_g02312 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Azfi_s0373.g067189 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.17 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Lfl_g11459 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Nbi_g20365 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Sam_g19523 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Sam_g44867 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Tin_g01402 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Zm00001e001000_P001 Zm00001e001000 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
Zm00001e013395_P002 Zm00001e013395 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Zm00001e038613_P001 Zm00001e038613 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0032299 ribonuclease H2 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 74
No external refs found!