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  5. LOC_Os03g12530.1

LOC_Os03g12530.1 (LOC_Os03g12530)


Aliases : LOC_Os03g12530

Description : manganese cation transporter (Mn-CDF)


Gene families : OG0000679 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000679_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g12530.1
Cluster HCCA: Cluster_493

Target Alias Description ECC score Gene Family Method Actions
Dac_g00877 ATMTP11, MTP11 manganese cation transporter *(Mn-CDF) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g18371 ATMTP11, MTP11 manganese cation transporter *(Mn-CDF) & original... 0.02 OrthoFinder output from all 47 species
Len_g28185 ATMTP11, MTP11 manganese cation transporter *(Mn-CDF) & original... 0.02 OrthoFinder output from all 47 species
Smo96683 No alias Solute transport.carrier-mediated transport.CDF... 0.02 OrthoFinder output from all 47 species
Solyc12g017340.1.1 Solyc12g017340 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Solyc12g017350.2.1 Solyc12g017350 manganese cation transporter (Mn-CDF) 0.03 OrthoFinder output from all 47 species
Solyc12g100300.2.1 Solyc12g100300 manganese cation transporter (Mn-CDF) 0.03 OrthoFinder output from all 47 species
Zm00001e019356_P001 ATMTP11, MTP11,... manganese cation transporter (Mn-CDF) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006812 monoatomic cation transport IEA Interproscan
MF GO:0008324 monoatomic cation transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0019139 cytokinin dehydrogenase activity IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
InterPro domains Description Start Stop
IPR027470 Cation_efflux_CTD 302 377
IPR002524 Cation_efflux 105 297
No external refs found!