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  5. LOC_Os03g09280.2

LOC_Os03g09280.2 (PAT1, LOC_Os03g09280)


Aliases : PAT1, LOC_Os03g09280

Description : transcription factor (GRAS)


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g09280.2
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14312 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03969 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G064200.1 PAT1, Ceric.26G064200 GRAS-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g16282 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030047001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
LOC_Os01g65900.1 SCL1, LOC_Os01g65900 transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Pir_g24150 SCL13 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g054170.4.1 SCL13, Solyc05g054170 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e002780_P001 PAT1, Zm00001e002780 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e031707_P001 SCL1, Zm00001e031707 transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 167 535
No external refs found!