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  5. LOC_Os03g09100.1

LOC_Os03g09100.1 (CAMTA3, SR1, LOC_Os03g09100)


Aliases : CAMTA3, SR1, LOC_Os03g09100

Description : transcription factor (CAMTA)


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g09100.1

Target Alias Description ECC score Gene Family Method Actions
AT5G09410 EICBP.B, CAMTA1 ethylene induced calmodulin binding protein 0.02 OrthoFinder output from all 47 species
Aev_g01603 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G055700.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.31G019600.1 Ceric.31G019600 CAMTA-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01004860001 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.03 OrthoFinder output from all 47 species
GSVIVT01010510001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.03 OrthoFinder output from all 47 species
Gb_04014 No alias transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
MA_10437204g0010 No alias transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
Msp_g13205 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27631 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11905 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07183 No alias CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29383 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g105230.4.1 Solyc01g105230 transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Zm00001e012888_P005 CAMTA3, SR1,... transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002909 IPT_dom 442 517
IPR005559 CG-1_dom 21 134
IPR000048 IQ_motif_EF-hand-BS 848 867
IPR000048 IQ_motif_EF-hand-BS 872 891
No external refs found!