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  5. LOC_Os03g08570.1

LOC_Os03g08570.1 (PDS3, PDS, PDE226,...)


Aliases : PDS3, PDS, PDE226, LOC_Os03g08570

Description : phytoene desaturase (PDS)


Gene families : OG0006245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g08570.1

Target Alias Description ECC score Gene Family Method Actions
AT4G14210 PDS3, PDS, PDE226 phytoene desaturase 3 0.05 OrthoFinder output from all 47 species
Aev_g13760 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09707 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01360 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0047.g030344 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: CDS=138-1889 0.02 OrthoFinder output from all 47 species
Ceric.08G066500.1 PDS3, PDS,... phytoene desaturase *(PDS) & original description:... 0.07 OrthoFinder output from all 47 species
Cre12.g509650 PDS3, PDS, PDE226 Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
Dcu_g01529 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23615 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016650001 PDS3, PDS, PDE226 Secondary metabolism.terpenoids.terpenoid... 0.05 OrthoFinder output from all 47 species
Len_g09650 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01859 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.07 OrthoFinder output from all 47 species
Mp8g14330.1 PDS3, PDS, PDE226 phytoene desaturase (PDS) 0.02 OrthoFinder output from all 47 species
Pnu_g17790 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013549 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: CDS=202-1980 0.02 OrthoFinder output from all 47 species
Sam_g12424 No alias phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g01539 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02716 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000618_P002 PDS3, PDS,... phytoene desaturase (PDS) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004325 ferrochelatase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 114 555
No external refs found!