LOC_Os03g07360.1 (CDF3, LOC_Os03g07360)

Aliases : CDF3, LOC_Os03g07360

Description : transcription factor (DOF)

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g07360.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00213350	ADOF1, DOF1,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AT2G28510	No alias	Dof-type zinc finger DNA-binding family protein	0.06	OrthoFinder output from all 47 species
AT2G28810	No alias	Dof-type zinc finger DNA-binding family protein	0.05	OrthoFinder output from all 47 species
AT5G60850	OBP4	OBF binding protein 4	0.04	OrthoFinder output from all 47 species
AT5G62430	CDF1	cycling DOF factor 1	0.05	OrthoFinder output from all 47 species
Adi_g007049	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g012791	CDF3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g050522	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g075098	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g03761	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g16400	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g01888	CDF3	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g04849	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20563	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.07	OrthoFinder output from all 47 species
Als_g27376	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g51755	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g18876	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene37574.t1	OBP3, Aspi01Gene37574	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0054.g033832	CDF3	transcription factor *(DOF) & original description: CDS=354-1853	0.03	OrthoFinder output from all 47 species
Azfi_s1074.g096912	TMO6	transcription factor *(DOF) & original description: CDS=1-1176	0.03	OrthoFinder output from all 47 species
Azfi_s4159.g118156	TMO6	transcription factor *(DOF) & original description: CDS=1-876	0.03	OrthoFinder output from all 47 species
Cba_g11407	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g24216	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g57567	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G055200.1	TMO6, Ceric.09G055200	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.12G042700.1	TMO6, Ceric.12G042700	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.30G042800.1	OBP3, Ceric.30G042800	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Cre12.g521150	CDF2	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
Dac_g02618	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g40320	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g02219	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g02221	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g25853	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g26721	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07699	CDF3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12302	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01005057001	TMO6	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
GSVIVT01007992001	CDF1	RNA biosynthesis.transcriptional activation.C2C2...	0.05	OrthoFinder output from all 47 species
GSVIVT01016538001	OBP3	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
GSVIVT01019619001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
GSVIVT01024986001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
LOC_Os01g64590.1	LOC_Os01g64590	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os03g38870.1	LOC_Os03g38870	transcription factor (DOF)	0.1	OrthoFinder output from all 47 species
LOC_Os03g60630.1	LOC_Os03g60630	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os04g47990.1	LOC_Os04g47990	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Len_g10091	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
MA_46520g0010	No alias	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Mp2g20790.1	TMO6	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Msp_g15852	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g16351	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17212	OBP3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42354	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g10327	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14293	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g18526	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g24818	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19752	OBP4	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g09266	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g53532	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012148	ADOF1, DOF1	transcription factor *(DOF) & original description: CDS=1-1128	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020125	No alias	transcription factor *(DOF) & original description: CDS=124-2595	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023637	CDF3	transcription factor *(DOF) & original description: CDS=1-1434	0.02	OrthoFinder output from all 47 species
Sam_g36281	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g50151	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g077950.3.1	Solyc02g077950	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc02g077960.3.1	TMO6, Solyc02g077960	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc02g090220.3.1	OBP1, Solyc02g090220	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc05g007880.4.1	CDF1, Solyc05g007880	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Solyc05g054510.2.1	OBP3, Solyc05g054510	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc06g062520.1.1	ADOF1, DOF1,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc06g069760.3.1	CDF3, Solyc06g069760	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc06g071480.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Spa_g05594	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g49511	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g54524	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g20763	CDF3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g23610	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000526_P001	CDF3, Zm00001e000526	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e001988_P001	TMO6, Zm00001e001988	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e005785_P001	ADOF2, DOF2,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e006190_P001	Zm00001e006190	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e007228_P002	Zm00001e007228	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e009303_P001	TMO6, Zm00001e009303	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e010454_P001	TMO6, Zm00001e010454	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e012437_P001	ADOF1, DOF1,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e015414_P004	Zm00001e015414	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e015597_P001	HCA2, DOF5.6,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e019172_P001	Zm00001e019172	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e023218_P004	Zm00001e023218	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e035074_P001	TMO6, Zm00001e035074	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e041444_P001	Zm00001e041444	transcription factor (DOF)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	104	160

External Links

No external refs found!

LOC_Os03g07360.1 (CDF3, LOC_Os03g07360)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation