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  5. LOC_Os03g04620.1

LOC_Os03g04620.1 (LOC_Os03g04620)


Aliases : LOC_Os03g04620

Description : no hits & (original description: none)


Gene families : OG0001446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g04620.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G04500 No alias CCT motif family protein 0.08 OrthoFinder output from all 47 species
Ceric.14G049500.1 Ceric.14G049500 CMF transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g32266 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01052 No alias CMF transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g29923 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g083400.3.1 Solyc03g083400 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g090650.3.1 Solyc09g090650 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e004626_P002 Zm00001e004626 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e012722_P001 Zm00001e012722 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 313 355
No external refs found!