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  5. LOC_Os03g02440.1

LOC_Os03g02440.1 (LOC_Os03g02440)


Aliases : LOC_Os03g02440

Description : COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana (sp|q9m2z2|wdr5a_arath : 87.0)


Gene families : OG0001278 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001278_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g02440.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00268480 evm_27.TU.AmTr_v1... COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
AMTR_s00069p00055450 evm_27.TU.AmTr_v1... COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
AMTR_s00175p00024710 No alias COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
Aev_g28795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G113100.1 Ceric.01G113100 not classified & original description: pacid=50591929... 0.05 OrthoFinder output from all 47 species
Dcu_g45060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025889 No alias not classified & original description: CDS=399-2942 0.02 OrthoFinder output from all 47 species
Solyc03g082870.4.1 Solyc03g082870 COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
Solyc10g086430.3.1 Solyc10g086430 COMPASS-like H3K4 histone methylase component WDR5B... 0.05 OrthoFinder output from all 47 species
Tin_g30658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000107_P001 Zm00001e000107 COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
Zm00001e007441_P001 Zm00001e007441 COMPASS-like H3K4 histone methylase component WDR5B... 0.03 OrthoFinder output from all 47 species
Zm00001e039506_P002 Zm00001e039506 COMPASS-like H3K4 histone methylase component WDR5B... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 411 448
IPR001680 WD40_repeat 370 405
IPR001680 WD40_repeat 557 581
IPR001680 WD40_repeat 270 301
No external refs found!