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  5. LOC_Os03g02430.1

LOC_Os03g02430.1 (LOC_Os03g02430)


Aliases : LOC_Os03g02430

Description : Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana (sp|q9scp4|pp279_arath : 520.0)


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g02430.1

Target Alias Description ECC score Gene Family Method Actions
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Aspi01Gene36337.t1 EMB2453, ATPPR5,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0174.g055903 EMB2453, ATPPR5 not classified & original description: CDS=133-1563 0.02 OrthoFinder output from all 47 species
Dcu_g01190 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08087 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017677001 EMB2750 Pentatricopeptide repeat-containing protein At3g06430,... 0.14 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 OrthoFinder output from all 47 species
Gb_36199 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.07 OrthoFinder output from all 47 species
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 OrthoFinder output from all 47 species
Len_g15301 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431478g0010 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.09 OrthoFinder output from all 47 species
MA_12518g0010 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein PPR5... 0.04 OrthoFinder output from all 47 species
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
Msp_g27398 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07398 EMB2453, ATPPR5 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g09304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16720 EMB2453, ATPPR5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g11535 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017959 EMB2453, ATPPR5 not classified & original description: CDS=1-1101 0.02 OrthoFinder output from all 47 species
Solyc01g057200.4.1 EMB2750, Solyc01g057200 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.08 OrthoFinder output from all 47 species
Solyc12g098990.2.1 EMB2750, Solyc12g098990 Pentatricopeptide repeat-containing protein At3g06430,... 0.05 OrthoFinder output from all 47 species
Zm00001e000106_P001 Zm00001e000106 Pentatricopeptide repeat-containing protein At3g53170... 0.06 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.04 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 196 225
IPR002885 Pentatricopeptide_repeat 300 349
IPR002885 Pentatricopeptide_repeat 229 277
IPR002885 Pentatricopeptide_repeat 372 417
IPR002885 Pentatricopeptide_repeat 122 171
No external refs found!