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  5. LOC_Os03g01970.1

LOC_Os03g01970.1 (AtHPR1, AtTHO1, THO1,...)


Aliases : AtHPR1, AtTHO1, THO1, HPR1, LOC_Os03g01970

Description : component THOC1/HPR1 of mRNP trafficking THO subcomplex


Gene families : OG0005828 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g01970.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT5G09860 AtHPR1, AtTHO1,... nuclear matrix protein-related 0.03 OrthoFinder output from all 47 species
Aev_g07899 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Azfi_s0252.g060313 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Cre16.g695300 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Ehy_g01414 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Lfl_g19049 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
MA_32182g0010 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.04 OrthoFinder output from all 47 species
Ore_g03945 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Pnu_g11959 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Sam_g15781 No alias component *(THOC1/HPR1) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
Solyc01g096600.4.1 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021861 THO_THOC1 126 526
No external refs found!