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  5. LOC_Os02g58210.1

LOC_Os02g58210.1 (LOC_Os02g58210)


Aliases : LOC_Os02g58210

Description : histone demethylase (KDM3). transcription factor (JUMONJI)


Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g58210.1
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00037p00169980 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AT4G00990 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene13978.t1 Aspi01Gene13978 histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63285.t2 Aspi01Gene63285 histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G056600.1 Ceric.14G056600 histone demethylase *(KDM3) & original description:... 0.03 OrthoFinder output from all 47 species
MA_491986g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
MA_97681g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Nbi_g08776 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13618 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004958_P004 Zm00001e004958 histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 822 924
IPR018866 Znf-4CXXC_R1 163 230
No external refs found!