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  5. LOC_Os02g56014.1

LOC_Os02g56014.1 (LOC_Os02g56014)


Aliases : LOC_Os02g56014

Description : component RPS30 of SSU proteome


Gene families : OG0002477 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002477_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g56014.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00064720 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT2G19750 No alias Ribosomal protein S30 family protein 0.16 OrthoFinder output from all 47 species
AT4G29390 No alias Ribosomal protein S30 family protein 0.2 OrthoFinder output from all 47 species
AT5G56670 No alias Ribosomal protein S30 family protein 0.24 OrthoFinder output from all 47 species
Azfi_s0068.g036442 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cre16.g666301 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
MA_10432727g0010 No alias component RPS30 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp2g24290.1 No alias component RPS30 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp8g09080.1 No alias component RPS30 of SSU proteome 0.1 OrthoFinder output from all 47 species
Pp3c1_420V3.1 Pp3c1_420 Ribosomal protein S30 family protein 0.01 OrthoFinder output from all 47 species
Pp3c2_28870V3.1 Pp3c2_28870 Ribosomal protein S30 family protein 0.01 OrthoFinder output from all 47 species
Pp3c2_29010V3.1 Pp3c2_29010 Ribosomal protein S30 family protein 0.03 OrthoFinder output from all 47 species
Smo227173 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Solyc12g008700.3.1 Solyc12g008700 component RPS30 of SSU proteome 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR006846 Ribosomal_S30 3 59
No external refs found!