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  5. LOC_Os02g55630.1

LOC_Os02g55630.1 (PTAC17, LOC_Os02g55630)


Aliases : PTAC17, LOC_Os02g55630

Description : TAC17 cofactor of plastid-encoded RNA polymerase


Gene families : OG0001348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g55630.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 PTAC17,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
AT1G80480 PTAC17 plastid transcriptionally active 17 0.06 OrthoFinder output from all 47 species
Adi_g057639 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Adi_g057640 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Aev_g01041 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.05 OrthoFinder output from all 47 species
Ala_g23339 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.05 OrthoFinder output from all 47 species
Als_g22412 PTAC17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0152.g053430 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Cba_g19694 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ceric.38G055600.1 PTAC17, Ceric.38G055600 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001110.7 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g22058 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Dcu_g04708 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Dde_g11205 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.06 OrthoFinder output from all 47 species
Ehy_g22577 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01017471001 PTAC17 RNA biosynthesis.organelle machineries.RNA polymerase... 0.1 OrthoFinder output from all 47 species
Gb_00365 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Gb_13256 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Len_g48260 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.06 OrthoFinder output from all 47 species
Lfl_g01488 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
MA_10426227g0010 PTAC17 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Msp_g12994 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Pp3c11_23140V3.1 PTAC17, Pp3c11_23140 plastid transcriptionally active 17 0.03 OrthoFinder output from all 47 species
Ppi_g13366 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014804 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0495.g027428 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.06 OrthoFinder output from all 47 species
Smo405512 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
Tin_g15394 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Zm00001e016143_P001 Zm00001e016143 TAC17 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 91 274
IPR011629 CobW-like_C 350 444
No external refs found!