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  5. LOC_Os02g55570.1

LOC_Os02g55570.1 (LOC_Os02g55570)


Aliases : LOC_Os02g55570

Description : centromeric cohesion protection factor (SGO)


Gene families : OG0005368 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005368_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g55570.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene10753.t1 Aspi01Gene10753 HSF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.10G068500.1 Ceric.10G068500 centromeric cohesion protection factor *(SGO) & original... 0.19 OrthoFinder output from all 47 species
GSVIVT01031478001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.18 OrthoFinder output from all 47 species
Len_g22012 No alias centromeric cohesion protection factor *(SGO) & original... 0.03 OrthoFinder output from all 47 species
MA_913563g0010 No alias centromeric cohesion protection factor (SGO) 0.11 OrthoFinder output from all 47 species
Mp4g05800.1 No alias centromeric cohesion protection factor (SGO) 0.12 OrthoFinder output from all 47 species
Msp_g12980 No alias centromeric cohesion protection factor *(SGO) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g00660 No alias centromeric cohesion protection factor *(SGO) & original... 0.18 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015534 No alias centromeric cohesion protection factor *(SGO) & original... 0.09 OrthoFinder output from all 47 species
Sam_g15600 No alias centromeric cohesion protection factor *(SGO) & original... 0.05 OrthoFinder output from all 47 species
Solyc11g008090.2.1 Solyc11g008090 centromeric cohesion protection factor (SGO) 0.04 OrthoFinder output from all 47 species
Solyc11g066350.2.1 Solyc11g066350 centromeric cohesion protection factor (SGO) 0.17 OrthoFinder output from all 47 species
Zm00001e004653_P001 Zm00001e004653 centromeric cohesion protection factor (SGO) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0045132 meiotic chromosome segregation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR011515 Shugoshin_C 474 499
No external refs found!