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  5. LOC_Os02g54780.1

LOC_Os02g54780.1 (LOC_Os02g54780)


Aliases : LOC_Os02g54780

Description : Protein CYPRO4 OS=Cynara cardunculus (sp|p40781|cypr4_cynca : 660.0)


Gene families : OG0002427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g54780.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AT3G19240 No alias Vacuolar import/degradation, Vid27-related protein 0.05 OrthoFinder output from all 47 species
Aev_g34580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23238 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01031748001 No alias Protein CYPRO4 OS=Cynara cardunculus 0.05 OrthoFinder output from all 47 species
Len_g24425 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11613 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g07241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g108250.3.1 Solyc01g108250 Protein CYPRO4 OS=Cynara cardunculus... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013863 VID27_C 239 558
No external refs found!