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  5. LOC_Os02g53500.1

LOC_Os02g53500.1 (RFC3, RFC5, LOC_Os02g53500)


Aliases : RFC3, RFC5, LOC_Os02g53500

Description : component RFC5 of PCNA sliding clamp loader complex


Gene families : OG0005788 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005788_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g53500.1
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Aev_g30351 RFC3, RFC5 component *(RFC5) of PCNA sliding clamp loader complex &... 0.02 OrthoFinder output from all 47 species
Cre12.g527300 RFC3, RFC5 Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01008841001 RFC3, RFC5 Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species
MA_102777g0010 RFC3, RFC5 Replication factor C subunit 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g01560 RFC3, RFC5 component *(RFC5) of PCNA sliding clamp loader complex &... 0.04 OrthoFinder output from all 47 species
Nbi_g22440 RFC3, RFC5 component *(RFC5) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023060 RFC3, RFC5 component *(RFC5) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
Spa_g04182 RFC3, RFC5 component *(RFC5) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 74 195
IPR013748 Rep_factorC_C 262 353
No external refs found!