LOC_Os02g01355.1


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0013022 (LandPlants) Phylogenetic Tree(s): OG_02_0013022_tree ,
OG_03_0013067 (SeedPlants) Phylogenetic Tree(s): OG_03_0013067_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g01355.1
Cluster HCCA: Cluster_340

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.02 Archaeplastida
AMTR_s00127p00060060 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.03 Archaeplastida
AT4G37940 AGL21 AGAMOUS-like 21 0.04 Archaeplastida
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
MA_138440g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Pp3c1_39760V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc03g019710.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc11g010570.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 50 97
IPR002487 TF_Kbox 125 213
No external refs found!