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  5. LOC_Os02g53050.1

LOC_Os02g53050.1 (PDE247, CLB19, LOC_Os02g53050)


Aliases : PDE247, CLB19, LOC_Os02g53050

Description : RNA editing factor (CLB19)


Gene families : OG0006286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g53050.1

Target Alias Description ECC score Gene Family Method Actions
AT1G09220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G33350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G56310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
GSVIVT01012620001 No alias Pentatricopeptide repeat-containing protein At1g09220,... 0.03 OrthoFinder output from all 47 species
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.04 OrthoFinder output from all 47 species
GSVIVT01025389001 OTP82 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01035920001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
Gb_29874 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Gb_32475 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_33068 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
LOC_Os02g06880.1 LOC_Os02g06880 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
LOC_Os05g01635.1 LOC_Os05g01635 Pentatricopeptide repeat-containing protein At3g51320... 0.06 OrthoFinder output from all 47 species
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc02g080350.1.1 Solyc02g080350 Pentatricopeptide repeat-containing protein At1g77170,... 0.04 OrthoFinder output from all 47 species
Solyc02g094125.1.1 Solyc02g094125 Pentatricopeptide repeat-containing protein At5g56310... 0.04 OrthoFinder output from all 47 species
Solyc06g009620.1.1 Solyc06g009620 Pentatricopeptide repeat-containing protein At1g09220,... 0.03 OrthoFinder output from all 47 species
Solyc09g092150.1.1 MEF21, Solyc09g092150 RNA editing factor (MEF21) 0.05 OrthoFinder output from all 47 species
Solyc11g012570.3.1 Solyc11g012570 Pentatricopeptide repeat-containing protein At3g51320... 0.03 OrthoFinder output from all 47 species
Zm00001e029647_P001 Zm00001e029647 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e033388_P001 OTP84, Zm00001e033388 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 196
IPR002885 Pentatricopeptide_repeat 199 247
IPR002885 Pentatricopeptide_repeat 301 348
IPR002885 Pentatricopeptide_repeat 275 300
IPR002885 Pentatricopeptide_repeat 375 399
No external refs found!