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  5. LOC_Os02g52190.1

LOC_Os02g52190.1 (LOC_Os02g52190)


Aliases : LOC_Os02g52190

Description : transcription factor (bHLH)


Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g52190.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00198490 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00198780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Als_g03090 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27262 FMA bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene18861.t1 FMA, Aspi01Gene18861 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38670.t1 FMA, Aspi01Gene38670 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0379.g067342 FMA not classified & original description: CDS=1-1560 0.03 OrthoFinder output from all 47 species
Cba_g00995 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06394 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.17G023000.1 FMA, Ceric.17G023000 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.2 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.61 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.01 OrthoFinder output from all 47 species
Dac_g12824 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02905 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013144001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.09 OrthoFinder output from all 47 species
Lfl_g35034 FMA bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g11060 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33721 FMA bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g63342 FMA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63346 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012172 FMA bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013314 FMA bHLH-type transcription factor & original description: CDS=1-1482 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021350 FMA bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Smo91359 FMA RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Solyc04g074810.4.1 Solyc04g074810 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc05g053660.3.1 FMA, Solyc05g053660 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc11g010340.2.1 Solyc11g010340 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Spa_g17260 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000161_P002 Zm00001e000161 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e015903_P001 Zm00001e015903 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e023271_P001 Zm00001e023271 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e023838_P003 Zm00001e023838 transcription factor (bHLH) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 136 187
No external refs found!