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  5. LOC_Os02g51280.1

LOC_Os02g51280.1 (LOC_Os02g51280)


Aliases : LOC_Os02g51280

Description : transcription factor (TCP)


Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g51280.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AT1G69690 No alias TCP family transcription factor 0.04 OrthoFinder output from all 47 species
AT2G45680 No alias TCP family transcription factor 0.03 OrthoFinder output from all 47 species
AT3G45150 TCP16 TCP domain protein 16 0.06 OrthoFinder output from all 47 species
AT5G51910 No alias TCP family transcription factor 0.02 OrthoFinder output from all 47 species
Adi_g069116 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108415 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03271 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12872 No alias TCP-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene65051.t1 AT-TCP20, TCP20,... circadian clock activation factor *(TCP20) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene72040.t1 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013244 No alias TCP-type transcription factor & original description: CDS=1-1674 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030896 No alias TCP-type transcription factor & original description: CDS=1-1743 0.06 OrthoFinder output from all 47 species
Ceric.02G017100.1 Ceric.02G017100 TCP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.12G053600.1 AtTCP14, TCP14,... TCP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g06337 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06407 No alias TCP-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01008023001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.07 OrthoFinder output from all 47 species
GSVIVT01020011001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.07 OrthoFinder output from all 47 species
GSVIVT01023283001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.06 OrthoFinder output from all 47 species
GSVIVT01026145001 No alias Multi-process regulation.circadian clock.morning element... 0.05 OrthoFinder output from all 47 species
Lfl_g07877 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_16752g0010 No alias transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
MA_81710g0010 No alias transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Msp_g10117 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04818 No alias circadian clock activation factor *(TCP20) & original... 0.04 OrthoFinder output from all 47 species
Ore_g40661 No alias circadian clock activation factor *(TCP20) & original... 0.04 OrthoFinder output from all 47 species
Pir_g32344 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50317 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01307 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo441321 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
Solyc03g006800.1.1 Solyc03g006800 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e003744_P001 Zm00001e003744 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e015821_P001 Zm00001e015821 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e023897_P001 Zm00001e023897 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e024509_P001 Zm00001e024509 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 72 242
No external refs found!