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  5. LOC_Os02g49230.2

LOC_Os02g49230.2 (COL9, LOC_Os02g49230)


Aliases : COL9, LOC_Os02g49230

Description : transcription factor (BBX-CO)


Gene families : OG0001549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g49230.2
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Adi_g064822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085060 No alias BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28741.t1 Aspi01Gene28741 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28742.t1 Aspi01Gene28742 BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.35G051200.1 COL9, Ceric.35G051200 BBX class-II transcription factor & original... 0.07 OrthoFinder output from all 47 species
MA_14527g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011515 COL9 BBX class-II transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012315 COL9 BBX class-II transcription factor & original... 0.02 OrthoFinder output from all 47 species
Solyc05g020020.4.1 Solyc05g020020 transcription factor (BBX-CO) 0.07 OrthoFinder output from all 47 species
Solyc05g024010.3.1 Solyc05g024010 transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 423 465
No external refs found!