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  5. LOC_Os02g49070.1

LOC_Os02g49070.1 (AGD12, ZAC, LOC_Os02g49070)


Aliases : AGD12, ZAC, LOC_Os02g49070

Description : class III ARF-GAP ARF-GTPase-activating protein


Gene families : OG0000461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000461_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g49070.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Adi_g048551 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096987 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g44163 AGD12, ZAC not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g17859 AGD13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04548 AGD12, ZAC not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04419 AGD12, ZAC not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015687_P004 AGD12, ZAC,... class III ARF-GAP ARF-GTPase-activating protein 0.05 OrthoFinder output from all 47 species
Zm00001e023402_P004 AGD12, ZAC,... class III ARF-GAP ARF-GTPase-activating protein 0.05 OrthoFinder output from all 47 species
Zm00001e028315_P003 Zm00001e028315 class III ARF-GAP ARF-GTPase-activating protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000008 C2_dom 177 263
IPR001164 ArfGAP_dom 21 136
No external refs found!