1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g47900.1

LOC_Os02g47900.1 (LOC_Os02g47900)


Aliases : LOC_Os02g47900

Description : class V/Su(var) histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0002813 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002813_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47900.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00171720 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Adi_g018566 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Adi_g102347 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ala_g02696 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Als_g18660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23979 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036615 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ceric.01G055800.1 Ceric.01G055800 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Dcu_g04992 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
GSVIVT01019046001 No alias Chromatin organisation.histone modifications.histone... 0.08 OrthoFinder output from all 47 species
Gb_09467 No alias class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Gb_27710 No alias class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Len_g13038 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Lfl_g03507 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
MA_10427485g0010 No alias Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10428046g0010 No alias class V/Su(var) histone methyltransferase component of... 0.04 OrthoFinder output from all 47 species
MA_10428226g0010 No alias class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Mp7g11940.1 No alias class V/Su(var) histone methyltransferase component of... 0.04 OrthoFinder output from all 47 species
Nbi_g01510 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Ore_g28925 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020752 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Solyc02g089970.3.1 Solyc02g089970 class V/Su(var) histone methyltransferase component of... 0.04 OrthoFinder output from all 47 species
Zm00001e023341_P001 Zm00001e023341 class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0018024 histone lysine N-methyltransferase activity IEA Interproscan
BP GO:0034968 histone lysine methylation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 385 508
IPR007728 Pre-SET_dom 236 366
No external refs found!