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  5. LOC_Os02g47640.1

LOC_Os02g47640.1 (TLP2, AtTLP2, LOC_Os02g47640)


Aliases : TLP2, AtTLP2, LOC_Os02g47640

Description : transcription factor (TUB)


Gene families : OG0000251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47640.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 TLP10, AtTLP10,... RNA biosynthesis.transcriptional activation.TUB... 0.03 OrthoFinder output from all 47 species
AT1G61940 AtTLP4, TLP4 tubby like protein 4 0.02 OrthoFinder output from all 47 species
Adi_g006888 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054676 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076987 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110979 AtTLP1, TLP1 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07274 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19726 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02286 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01271 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26936.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene71057.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72676.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16858 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16860 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78284 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.39G011000.1 AtTLP3, TLP3,... TUB-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g08196 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15238 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05701 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06248 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07045 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g09393 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12682 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03661 TLP10, AtTLP10 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08281 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09015 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09092 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24072 TLP10, AtTLP10 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029701001 TLP10, AtTLP10 RNA biosynthesis.transcriptional activation.TUB... 0.03 OrthoFinder output from all 47 species
Gb_38150 AtTLP3, TLP3 transcription factor (TUB) 0.03 OrthoFinder output from all 47 species
Lfl_g09266 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10086 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03652 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03852 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42650 AtTLP1, TLP1 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00511 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01637 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02087 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02970 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18593 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14642 No alias TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26652 No alias TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo230435 AtTLP3, TLP3 RNA biosynthesis.transcriptional activation.TUB... 0.02 OrthoFinder output from all 47 species
Smo83983 AtTLP3, TLP3 RNA biosynthesis.transcriptional activation.TUB... 0.03 OrthoFinder output from all 47 species
Smo85745 AtTLP3, TLP3 RNA biosynthesis.transcriptional activation.TUB... 0.02 OrthoFinder output from all 47 species
Solyc02g085130.4.1 TLP2, AtTLP2,... transcription factor (TUB) 0.04 OrthoFinder output from all 47 species
Solyc10g046970.2.1 TLP10, AtTLP10,... transcription factor (TUB) 0.02 OrthoFinder output from all 47 species
Zm00001e007472_P001 TLP10, AtTLP10,... transcription factor (TUB) 0.03 OrthoFinder output from all 47 species
Zm00001e015581_P001 TLP2, AtTLP2,... transcription factor (TUB) 0.05 OrthoFinder output from all 47 species
Zm00001e019166_P001 TLP10, AtTLP10,... transcription factor (TUB) 0.02 OrthoFinder output from all 47 species
Zm00001e023326_P001 TLP2, AtTLP2,... transcription factor (TUB) 0.08 OrthoFinder output from all 47 species
Zm00001e024653_P002 AtTLP1, TLP1,... transcription factor (TUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000007 Tubby_C 131 423
IPR001810 F-box_dom 68 118
No external refs found!