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LOC_Os02g45980.1 (LOC_Os02g45980)


Aliases : LOC_Os02g45980

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 512.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g45980.1
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Adi_g004405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.33G007900.1 Ceric.33G007900 not classified & original description: pacid=50607060... 0.03 OrthoFinder output from all 47 species
Dcu_g11326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_27545 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
MA_10427405g0020 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Msp_g09378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007139_P001 Zm00001e007139 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Zm00001e007456_P003 PRAF1, Zm00001e007456 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.09 OrthoFinder output from all 47 species
Zm00001e018599_P001 Zm00001e018599 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e023246_P001 Zm00001e023246 PH, RCC1 and FYVE domains-containing protein 1... 0.07 OrthoFinder output from all 47 species
Zm00001e032303_P001 Zm00001e032303 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 900 952
IPR000408 Reg_chr_condens 257 309
IPR000408 Reg_chr_condens 313 361
IPR000408 Reg_chr_condens 478 527
IPR000408 Reg_chr_condens 374 422
IPR000408 Reg_chr_condens 206 254
IPR000306 Znf_FYVE 536 597
No external refs found!