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  5. LOC_Os02g45070.1

LOC_Os02g45070.1 (AGO1, LOC_Os02g45070)


Aliases : AGO1, LOC_Os02g45070

Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g45070.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Adi_g016083 PNH, AGO10, ZLL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086261 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089102 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Adi_g113326 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Ala_g33064 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71412.t1 AGO9, Aspi01Gene71412 siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029842 AGO1 not classified & original description: CDS=36-3650 0.03 OrthoFinder output from all 47 species
Cba_g77990 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Cre02.g141050 AGO1 Protein argonaute PNH1 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Dac_g02891 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Lfl_g03429 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
MA_10429131g0010 AGO1 Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_594g0010 PNH, AGO10, ZLL Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_91896g0010 AGO1 Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_9991250g0010 PNH, AGO10, ZLL Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Mp1g18110.1 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Msp_g13472 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Msp_g21068 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Pir_g40206 AGO5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007503 AGO1 not classified & original description: CDS=68-2746 0.02 OrthoFinder output from all 47 species
Sam_g29959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g069260.3.1 AGO2, Solyc02g069260 siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
Solyc07g049500.3.1 AGO6, Solyc07g049500 siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Spa_g54963 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012276_P001 AGO1, Zm00001e012276 Protein argonaute 12 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR032472 ArgoL2 559 605
IPR003100 PAZ_dom 423 548
IPR032473 Argonaute_Mid_dom 616 690
IPR032474 Argonaute_N 219 357
IPR024357 Argonaut_Gly-rich 104 200
IPR003165 Piwi 710 1029
IPR014811 ArgoL1 368 416
No external refs found!