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  5. LOC_Os02g43920.1

LOC_Os02g43920.1 (CDC23, APC8, LOC_Os02g43920)


Aliases : CDC23, APC8, LOC_Os02g43920

Description : component APC8 of (APC/C)-dependent ubiquitination arc lamp subcomplex


Gene families : OG0005671 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005671_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g43920.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00201110 CDC23, APC8,... Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre16.g681578 CDC23, APC8 Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.01 OrthoFinder output from all 47 species
Dcu_g01683 CDC23, APC8 component *(APC8) of (APC/C)-dependent ubiquitination... 0.05 OrthoFinder output from all 47 species
Dde_g14944 CDC23, APC8 component *(APC8) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Pnu_g00759 CDC23, APC8 component *(APC8) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Ppi_g18743 CDC23, APC8 component *(APC8) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Solyc03g113740.4.1 CDC23, APC8,... component APC8 of (APC/C)-dependent ubiquitination arc... 0.05 OrthoFinder output from all 47 species
Zm00001e015323_P003 CDC23, APC8,... component APC8 of (APC/C)-dependent ubiquitination arc... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005680 anaphase-promoting complex IEA Interproscan
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007192 APC8 8 177
IPR019734 TPR_repeat 358 389
No external refs found!