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  5. LOC_Os02g43750.1

LOC_Os02g43750.1 (TAF4, TAF4B, LOC_Os02g43750)


Aliases : TAF4, TAF4B, LOC_Os02g43750

Description : component TAF4 of TFIId basal transcription regulation complex


Gene families : OG0002362 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g43750.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Als_g10535 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Aob_g42043 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
Cba_g20855 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Ceric.35G034700.1 TAF4, TAF4B,... component *(TAF4) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
Ehy_g30151 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
GSVIVT01009365001 TAF4, TAF4B RNA biosynthesis.RNA polymerase II-dependent... 0.07 OrthoFinder output from all 47 species
Lfl_g32571 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Mp2g09230.1 TAF4, TAF4B component TAF4 of TFIId basal transcription regulation complex 0.06 OrthoFinder output from all 47 species
Sam_g24743 No alias component *(TAF4) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
Zm00001e016810_P001 TAF4, TAF4B,... component TAF4 of TFIId basal transcription regulation complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005669 transcription factor TFIID complex IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007900 TAF4_C 422 717
IPR022003 RST 83 145
No external refs found!