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  5. LOC_Os02g42406.1

LOC_Os02g42406.1 (ISE1, EMB1586, LOC_Os02g42406)


Aliases : ISE1, EMB1586, LOC_Os02g42406

Description : DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica (sp|q6h874|rh47a_orysj : 1071.0)


Gene families : OG0006427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g42406.1

Target Alias Description ECC score Gene Family Method Actions
AT1G12770 ISE1, EMB1586 P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Aop_g11392 ISE1, EMB1586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G072800.1 ISE1, EMB1586,... not classified & original description: pacid=50621729... 0.03 OrthoFinder output from all 47 species
Cre07.g349300 ISE1, EMB1586 DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.02 OrthoFinder output from all 47 species
Len_g13791 ISE1, EMB1586 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g40933 ISE1, EMB1586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_495935g0010 ISE1, EMB1586 DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.05 OrthoFinder output from all 47 species
Mp2g16530.1 ISE1, EMB1586 DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Ore_g20655 ISE1, EMB1586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28514 ISE1, EMB1586 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0186.g025087 ISE1, EMB1586 not classified & original description: CDS=1-1602 0.02 OrthoFinder output from all 47 species
Sam_g12494 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc08g080550.1.1 ISE1, EMB1586,... DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 420 526
IPR011545 DEAD/DEAH_box_helicase_dom 155 348
No external refs found!