1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g40810.1

LOC_Os02g40810.1 (PRT1, LOC_Os02g40810)


Aliases : PRT1, LOC_Os02g40810

Description : type-II-residues E3 ubiquitin ligase (PRT1)


Gene families : OG0002242 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002242_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g40810.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Aop_g11059 PRT1 type-II-residues E3 ubiquitin ligase *(PRT1) & original... 0.03 OrthoFinder output from all 47 species
Dac_g39497 PRT1 type-II-residues E3 ubiquitin ligase *(PRT1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e015136_P002 PRT1, Zm00001e015136 type-II-residues E3 ubiquitin ligase (PRT1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR000433 Znf_ZZ 295 334
IPR027370 Znf-RING_euk 181 215
No external refs found!