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  5. LOC_Os02g39820.1

LOC_Os02g39820.1 (NFD5, LOC_Os02g39820)


Aliases : NFD5, LOC_Os02g39820

Description : Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana (sp|q940z1|ppr51_arath : 210.0)


Gene families : OG0005460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g39820.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00240280 NFD5,... Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.02 OrthoFinder output from all 47 species
AT1G19520 NFD5 pentatricopeptide (PPR) repeat-containing protein 0.23 OrthoFinder output from all 47 species
Adi_g022181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03993 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.33G040200.1 Ceric.33G040200 not classified & original description: pacid=50607757... 0.03 OrthoFinder output from all 47 species
GSVIVT01009725001 NFD5 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Gb_09266 NFD5 Pentatricopeptide repeat-containing protein At1g01970... 0.06 OrthoFinder output from all 47 species
MA_436401g0010 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.06 OrthoFinder output from all 47 species
MA_82129g0010 NFD5 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.04 OrthoFinder output from all 47 species
Msp_g14468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08961 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09598 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc07g025210.2.1 NFD5, Solyc07g025210 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Spa_g05060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07722 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015082_P001 NFD5, Zm00001e015082 Pentatricopeptide repeat-containing protein At1g19525... 0.19 OrthoFinder output from all 47 species
Zm00001e035782_P001 Zm00001e035782 Pentatricopeptide repeat-containing protein At1g01970... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 349 393
IPR002885 Pentatricopeptide_repeat 488 515
IPR002885 Pentatricopeptide_repeat 630 655
IPR002885 Pentatricopeptide_repeat 419 444
No external refs found!