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  5. LOC_Os02g39710.1

LOC_Os02g39710.1 (ATCOL5, COL5, LOC_Os02g39710)


Aliases : ATCOL5, COL5, LOC_Os02g39710

Description : transcription factor (BBX-CO)


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g39710.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 COL2, ATCOL2,... RNA biosynthesis.transcriptional activation.C2C2... 0.06 OrthoFinder output from all 47 species
AT2G24790 COL3, ATCOL3 CONSTANS-like 3 0.04 OrthoFinder output from all 47 species
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.09 OrthoFinder output from all 47 species
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.1 OrthoFinder output from all 47 species
AT5G24930 ATCOL4, COL4 CONSTANS-like 4 0.06 OrthoFinder output from all 47 species
AT5G57660 ATCOL5, COL5 CONSTANS-like 5 0.03 OrthoFinder output from all 47 species
Adi_g039730 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04849 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05121.t1 COL1, ATCOL1,... floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10222 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g64490 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G058700.1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.20G041500.1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description:... 0.05 OrthoFinder output from all 47 species
Cre06.g278159 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre12.g534100 COL2, ATCOL2 No description available 0.02 OrthoFinder output from all 47 species
Dac_g09279 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26717 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03545 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05588 COL2, ATCOL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09042 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029107001 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01036037001 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.08 OrthoFinder output from all 47 species
GSVIVT01036499001 COL2, ATCOL2 RNA biosynthesis.transcriptional activation.C2C2... 0.1 OrthoFinder output from all 47 species
LOC_Os02g08150.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g08431 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Mp8g13470.1 ATCOL4, COL4 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Ore_g09426 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20271 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34586 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34612 ATCOL4, COL4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g22158 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g48282 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014834 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: CDS=583-1560 0.02 OrthoFinder output from all 47 species
Sam_g26598 No alias floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26599 No alias floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Smo102902 COL2, ATCOL2 Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo185898 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Solyc02g089540.3.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species
Solyc12g096500.2.1 ATCOL4, COL4,... transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Spa_g06394 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002319_P001 ATCOL4, COL4,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Zm00001e007691_P001 Zm00001e007691 transcription factor (BBX-CO) 0.09 OrthoFinder output from all 47 species
Zm00001e013804_P001 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e021565_P001 ATCOL4, COL4,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e037706_P002 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e037873_P001 ATCOL4, COL4,... no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e039922_P001 COL3, ATCOL3,... no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e040482_P001 ATCOL4, COL4,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Zm00001e041152_P001 ATCOL5, COL5,... transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 261 303
IPR000315 Znf_B-box 31 67
IPR000315 Znf_B-box 69 114
No external refs found!