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  5. LOC_Os02g39160.1

LOC_Os02g39160.1 (CSB3, CLB4, GCPE,...)


Aliases : CSB3, CLB4, GCPE, HDS, ISPG, LOC_Os02g39160

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase


Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g39160.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00057810 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.03 OrthoFinder output from all 47 species
AT5G60600 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Aop_g14403 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.161 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.01 OrthoFinder output from all 47 species
Cre12.g490350 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.02 OrthoFinder output from all 47 species
Dac_g01725 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Dcu_g08921 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Lfl_g05647 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
MA_88006g0010 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
Mp5g09870.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Msp_g01219 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Pir_g09734 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003566 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Solyc11g069380.2.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
MF GO:0070402 NADPH binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004588 IspG_bac-typ 90 732
No external refs found!