LOC_Os02g37920.1 (PMS1, LOC_Os02g37920)


Aliases : PMS1, LOC_Os02g37920

Description : component PMS1 of MLH1-PMS1 heterodimer


Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g37920.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00213360 PMS1,... DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder output from all 47 species
Aop_g10894 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene67732.t1 PMS1, Aspi01Gene67732 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G086600.1 PMS1, Ceric.21G086600 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.93 PMS1 DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre04.g227000 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.04 OrthoFinder output from all 47 species
Ehy_g15907 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01027985001 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.08 OrthoFinder output from all 47 species
Len_g24503 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Sam_g14037 No alias component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Solyc09g074990.4.1 PMS1, Solyc09g074990 component PMS1 of MLH1-PMS1 heterodimer 0.05 OrthoFinder output from all 47 species
Spa_g19370 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.04 OrthoFinder output from all 47 species
Tin_g08739 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Zm00001e022851_P002 PMS1, Zm00001e022851 component PMS1 of MLH1-PMS1 heterodimer 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR014790 MutL_C 716 876
IPR013507 DNA_mismatch_S5_2-like 222 340
No external refs found!