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  5. LOC_Os02g35640.1

LOC_Os02g35640.1 (LOC_Os02g35640)


Aliases : LOC_Os02g35640

Description : no hits & (original description: none)


Gene families : OG0005842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g35640.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g051588 No alias regulatory protein *(SFT2) of COPII coatomer machinery &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000403.59 No alias No description available 0.01 OrthoFinder output from all 47 species
MA_10199026g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e022758_P001 Zm00001e022758 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007305 Vesicle_transpt_Got1/SFT2 58 163
No external refs found!