LOC_Os08g08830 (Os08g0187700)


Aliases : Os08g0187700

Description : 27.1.3.15 RNA.processing.3 end processing.Pcf11p Encodes PCFS4 (Pcf11p-similar protein 4), a homolog of yeast polyadenylation factor Protein 1 of Cleavage Factor (Pcf11p). Regulates FCA (AT4G16280) mRNA polyadenylation. Promotes flowering time.


Gene families : OG_01_0001528 (Gene family) Phylogenetic Tree(s): OG0001528_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os08g08830
Cluster HCCA cluster: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT4G04885 PCFS4 PCF11P-similar protein 4 0.05 Gene family
Cpa|evm.model.tig00000396.25 No alias No description available 0.02 Gene family
Cpa|evm.model.tig00001628.5 No alias No description available 0.03 Gene family
GSVIVT01012646001 No alias No description available 0.06 Gene family
GSVIVT01033783001 No alias 27.1.3.15 RNA.processing.3 end processing.Pcf11p... 0.05 Gene family
MA_132868g0010 No alias 27.1.3.15 RNA.processing.3 end processing.Pcf11p Encodes... 0.02 Gene family
Solyc09g009120.3.1 Solyc09g009120.3 27.1.3.15 RNA.processing.3 end processing.Pcf11p... 0.06 Gene family
Solyc10g083590.2.1 Solyc10g083590.2 27.1.3.15 RNA.processing.3 end processing.Pcf11p... 0.05 Gene family
Solyc12g094490.2.1 Solyc12g094490.2 No description available 0.03 Gene family
Zm00001d000023 GRMZM2G012761 27.1.3.15 RNA.processing.3 end processing.Pcf11p Encodes... 0.11 Gene family
Zm00001d005350 GRMZM2G466560 27.1.3.15 RNA.processing.3 end processing.Pcf11p... 0.05 Gene family
Zm00001d049442 GRMZM2G007734,... 27.1.3.15 RNA.processing.3 end processing.Pcf11p Encodes... 0.05 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 96 149
No external refs found!