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  5. LOC_Os02g21970.1

LOC_Os02g21970.1 (RPT3, LOC_Os02g21970)


Aliases : RPT3, LOC_Os02g21970

Description : regulatory component RPT3 of 26S proteasome


Gene families : OG0002973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g21970.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00161980 RPT3,... Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
AT5G58290 RPT3 regulatory particle triple-A ATPase 3 0.11 OrthoFinder output from all 47 species
Als_g27997 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Aop_g00613 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Aop_g02515 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene09478.t1 RPT3, Aspi01Gene09478 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G028300.1 RPT3, Ceric.01G028300 regulatory component *(RPT3) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.46 RPT3 26S proteasome regulatory subunit 6B homolog... 0.08 OrthoFinder output from all 47 species
Cre09.g402450 RPT3 Protein degradation.26S proteasome.regulatory... 0.13 OrthoFinder output from all 47 species
Dac_g16904 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Dcu_g00998 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
GSVIVT01024544001 RPT3 Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Gb_28081 RPT3 regulatory component RPT3 of 26S proteasome 0.03 OrthoFinder output from all 47 species
MA_8965097g0010 RPT3 26S proteasome regulatory subunit 6B homolog... 0.02 OrthoFinder output from all 47 species
Mp8g10830.1 RPT3 regulatory component RPT3 of 26S proteasome 0.11 OrthoFinder output from all 47 species
Nbi_g12291 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Sam_g35578 No alias regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Smo163630 RPT3 Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Smo180600 RPT3 Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Solyc06g082630.4.1 RPT3, Solyc06g082630 regulatory component RPT3 of 26S proteasome 0.07 OrthoFinder output from all 47 species
Solyc06g082660.4.1 RPT3, Solyc06g082660 regulatory component RPT3 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e014107_P001 RPT3, Zm00001e014107 regulatory component RPT3 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Zm00001e022619_P001 RPT3, Zm00001e022619 regulatory component RPT3 of 26S proteasome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 359 401
IPR032501 Prot_ATP_ID_OB_C 90 145
IPR003959 ATPase_AAA_core 203 336
No external refs found!