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  5. LOC_Os02g20160.1

LOC_Os02g20160.1 (LOC_Os02g20160)


Aliases : LOC_Os02g20160

Description : Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana (sp|p0c8r0|pp416_arath : 488.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g20160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.1 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g012989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0076.g037813 No alias not classified & original description: CDS=1-1092 0.04 OrthoFinder output from all 47 species
Cba_g16187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.18G058100.1 Ceric.18G058100 not classified & original description: pacid=50622152... 0.02 OrthoFinder output from all 47 species
Dac_g10060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
GSVIVT01028975001 No alias Pentatricopeptide repeat-containing protein At1g55630... 0.11 OrthoFinder output from all 47 species
Gb_19514 No alias Pentatricopeptide repeat-containing protein At3g25210,... 0.03 OrthoFinder output from all 47 species
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
MA_929381g0010 OTP43 OTP43 mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Solyc11g070040.3.1 Solyc11g070040 Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.02 OrthoFinder output from all 47 species
Zm00001e036305_P001 Zm00001e036305 Pentatricopeptide repeat-containing protein At3g25210,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 317 364
IPR002885 Pentatricopeptide_repeat 278 311
IPR002885 Pentatricopeptide_repeat 465 490
No external refs found!