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  5. LOC_Os02g16780.1

LOC_Os02g16780.1 (ATEXPA11, ATHEXP...)


Aliases : ATEXPA11, ATHEXP ALPHA 1.14, ATEXP11, EXP11, EXPA11, LOC_Os02g16780

Description : alpha-class expansin


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g16780.1

Target Alias Description ECC score Gene Family Method Actions
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.01 OrthoFinder output from all 47 species
Aev_g21084 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g22661 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g22708 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37023 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15151 EXPB3, ATEXPB3,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g52203 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g32812 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g41940 ATEXP14, EXPA14,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g58865 ATHEXP BETA 1.4,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene14337.t1 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene65171.t1 EXPB3, ATEXPB3,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0004.g008550 EXP15, ATEXPA15,... alpha-class expansin & original description: CDS=330-1061 0.02 OrthoFinder output from all 47 species
Azfi_s0140.g051279 ATEXPA10,... alpha-class expansin & original description: CDS=41-826 0.03 OrthoFinder output from all 47 species
Azfi_s0291.g063336 ATEXPA10,... alpha-class expansin & original description: CDS=142-915 0.02 OrthoFinder output from all 47 species
Azfi_s0515.g074978 ATEXPA10,... alpha-class expansin & original description: CDS=109-912 0.03 OrthoFinder output from all 47 species
Ceric.06G060100.1 EXPB3, ATEXPB3,... not classified & original description: pacid=50620545... 0.03 OrthoFinder output from all 47 species
Ceric.1Z063100.1 ATEXPA4, ATEXP4,... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G054100.1 ATEXPA3, EXP3,... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g25635 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g26026 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g30387 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g34602 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01024572001 EXPA8, ATHEXP... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.01 OrthoFinder output from all 47 species
GSVIVT01028474001 ATEXPA25,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01032935001 ATHEXP ALPHA ... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
LOC_Os01g14660.1 ATHEXP ALPHA... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os01g16770.1 ATEXPA10,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
LOC_Os03g01270.1 ATHEXP BETA 1.4,... Expansin-B7 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os03g06000.1 ATEXPA11, ATHEXP... alpha-class expansin 0.01 OrthoFinder output from all 47 species
LOC_Os03g21820.1 EXPA8, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os03g31480.1 ATEXPA11, ATHEXP... alpha-class expansin 0.03 OrthoFinder output from all 47 species
LOC_Os04g15840.1 LOC_Os04g15840 alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os04g44780.1 EXPB3, ATEXPB3,... Expansin-B17 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
LOC_Os04g46650.1 ATHEXP BETA 1.4,... Expansin-B5 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os05g19570.1 LOC_Os05g19570 alpha-class expansin 0.04 OrthoFinder output from all 47 species
LOC_Os05g19600.1 LOC_Os05g19600 alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os06g01920.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os08g44790.1 ATEXPA3, EXP3,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
LOC_Os10g30330.1 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g30340.1 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g39110.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g40710.1 ATHEXP BETA 1.4,... Expansin-B2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Len_g15335 EXPB3, ATEXPB3,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10313796g0010 EXPB1, ATEXPB1,... Expansin-B16 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
MA_130258g0010 ATEXP7, EXPA7,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
MA_134413g0010 ATHEXP ALPHA... alpha-class expansin 0.02 OrthoFinder output from all 47 species
MA_14588g0010 ATHEXP ALPHA... alpha-class expansin 0.01 OrthoFinder output from all 47 species
MA_18265g0010 ATHEXP ALPHA... alpha-class expansin 0.01 OrthoFinder output from all 47 species
MA_3618g0010 ATEXPA1, EXP1,... Expansin-A15 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_40671g0010 ATEXPA3, EXP3,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
MA_45587g0020 ATEXP7, EXPA7,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
MA_651027g0010 ATHEXP ALPHA... alpha-class expansin 0.03 OrthoFinder output from all 47 species
MA_915221g0010 ATEXPA1, EXP1,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Mp1g14140.1 EXPA8, ATHEXP... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Mp1g24390.1 EXPA6, ATEXP6,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Msp_g23319 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28493 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.05 OrthoFinder output from all 47 species
Solyc03g115300.2.1 ATHEXP ALPHA ... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Solyc03g115310.1.1 ATHEXP ALPHA ... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Solyc08g077330.3.1 ATHEXP BETA 3.1,... beta-like-class expansin 0.02 OrthoFinder output from all 47 species
Solyc08g077900.3.1 ATHEXP BETA 3.1,... beta-like-class expansin 0.01 OrthoFinder output from all 47 species
Zm00001e000036_P001 ATHEXP BETA 1.4,... Expansin-B4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e000429_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e004713_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Zm00001e014220_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e014221_P001 ATHEXP ALPHA... Expansin-A22 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e014231_P001 ATEXPA10,... Expansin-A13 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Zm00001e014247_P001 ATHEXP ALPHA... Expansin-A23 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e017334_P001 ATEXPA10,... alpha-class expansin 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016757 glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 168 246
IPR009009 RlpA-like_DPBB 70 157
No external refs found!